refresh_index(&the_index, REFRESH_QUIET|REFRESH_UNMERGED, s.pathspec, NULL, NULL);
s.is_initial = get_sha1(s.reference, sha1) ? 1 : 0;
s.in_merge = in_merge;
refresh_index(&the_index, REFRESH_QUIET|REFRESH_UNMERGED, s.pathspec, NULL, NULL);
s.is_initial = get_sha1(s.reference, sha1) ? 1 : 0;
s.in_merge = in_merge;